Pevzner BiosyntheticSPAdes: Reconstructing Biosynthetic Gene Clusters From Assembly Graphs Genome Research, Medema, Anton Korobeynikov, and Pavel A. Dmitry Meleshko, Hosein Mohimani, Vittorio Tracanna, Iman Hajirasouliha, Marnix H.Ivan Tolstoganov, Anton Bankevich, Zhoutao Chen, Pavel A Pevzner cloudSPAdes: Assembly of Synthetic Long Reads Using de Bruijn graphs Bioinformatics,.cloudSPAdes: Assembly of Synthetic Long Reads Using de Bruijn graphs (talk), Tools for assembly graph analysis via SPAdes toolbox and more (talk), metaplasmidSPAdes: Plasmid Detection and Assembly in Genomic and Metagenomic Datasets (talk), SPAdes Family of Tools for Genome Assembly and Analysis (poster), Pevzner metaviralSPAdes: assembly of viruses from metagenomic data Bioinformatics, Dmitry Antipov, Mikhail Rayko, Alla L.MGnify: the microbiome analysis resource in 2020 Nucleic Acids Research,
Mitchell AL, Almeida A, Beracochea M, Boland M, Burgin J, Cochrane G, Crusoe MR, Kale V, Potter SC, Richardson LJ, Sakharova E, Scheremetjew M, Korobeynikov A, Shlemov A, Kunyavskaya O, Lapidus A and Finn RD.ABySS 1.3.5, EULER-SR 2.0.1, Ray 2.2.0, SOAPdenovo 2.04, Velvet 1.2.07, and E+V-SC were run with vertex size 55. IDBA-UD 1.1.0 was run in its default iterative mode. A5 and CLC 8 were run with default parameters.
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